switchde

This is the released version of switchde; for the devel version, see switchde.

Switch-like differential expression across single-cell trajectories

Bioconductor version: Release (3.22)

Inference and detection of switch-like differential expression across single-cell RNA-seq trajectories.

Author: Kieran Campbell [aut, cre]

Maintainer: Kieran Campbell <kieranrcampbell at gmail.com>

Citation (from within R, enter citation("switchde")):

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("switchde")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("switchde")

An overview of the switchde package HTML R Script

Reference Manual PDF

NEWS Text

Version 1.36.0

In Bioconductor since BioC 3.4 (R-3.3) (9 years)

License GPL (>= 2)

Depends R (>= 3.4), SingleCellExperiment

Imports SummarizedExperiment, dplyr, ggplot2, methods, stats

System Requirements

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Follow Installation instructions to use this package in your R session.

Source Package switchde_1.36.0.tar.gz

Windows Binary (x86_64) switchde_1.35.0.zip

macOS Binary (x86_64) switchde_1.36.0.tgz

macOS Binary (arm64) switchde_1.36.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/switchde

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/switchde

Package Downloads Report Download Stats