scviR
This is the released version of scviR; for the devel version, see scviR.
experimental inferface from R to scvi-tools
Bioconductor version: Release (3.22)
This package defines interfaces from R to scvi-tools. A vignette works through the totalVI tutorial for analyzing CITE-seq data. Another vignette compares outputs of Chapter 12 of the OSCA book with analogous outputs based on totalVI quantifications. Future work will address other components of scvi-tools, with a focus on building understanding of probabilistic methods based on variational autoencoders.
Author: Vincent Carey [aut, cre] ORCID iD ORCID: 0000-0003-4046-0063
Maintainer: Vincent Carey <stvjc at channing.harvard.edu>
citation("scviR")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("scviR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("scviR")
Details
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Package Archives
Follow Installation instructions to use this package in your R session.