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recountmethylation
This is the released version of recountmethylation; for the devel version, see recountmethylation.
Access and analyze public DNA methylation array data compilations
Bioconductor version: Release (3.22)
Resources for cross-study analyses of public DNAm array data from NCBI GEO repo, produced using Illumina's Infinium HumanMethylation450K (HM450K) and MethylationEPIC (EPIC) platforms. Provided functions enable download, summary, and filtering of large compilation files. Vignettes detail background about file formats, example analyses, and more. Note the disclaimer on package load and consult the main manuscripts for further info.
Author: Sean K Maden [cre, aut] ORCID iD ORCID: 0000-0002-2212-4894 , Brian Walsh [aut] ORCID iD ORCID: 0000-0003-0913-1528 , Kyle Ellrott [aut] ORCID iD ORCID: 0000-0002-6573-5900 , Kasper D Hansen [aut] ORCID iD ORCID: 0000-0003-0086-0687 , Reid F Thompson [aut] ORCID iD ORCID: 0000-0003-3661-5296 , Abhinav Nellore [aut] ORCID iD ORCID: 0000-0001-8145-1484
Maintainer: Sean K Maden <maden at ohsu.edu>
citation("recountmethylation")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("recountmethylation")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("recountmethylation")
Details
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Package Archives
Follow Installation instructions to use this package in your R session.