nucleR
This is the released version of nucleR; for the devel version, see nucleR.
Nucleosome positioning package for R
Bioconductor version: Release (3.22)
Nucleosome positioning for Tiling Arrays and NGS experiments.
Author: Oscar Flores, Ricard Illa
Maintainer: Alba Sala <alba.sala at irbbarcelona.org>
Citation (from within R, enter
citation("nucleR")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("nucleR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("nucleR") Reference Manual
PDF
NEWS
Text
Details
biocViews
ChIPSeq, Coverage, DataImport, Genetics, Microarray, NucleosomePositioning, QualityControl, Sequencing, Software
Version
2.42.0
In Bioconductor since
BioC 2.9 (R-2.14) (14 years)
License
LGPL (>= 3)
Depends
R (>= 3.5.0), methods
Imports
Biobase, BiocGenerics, Biostrings, Seqinfo, GenomicRanges, IRanges, Rsamtools, S4Vectors, ShortRead, dplyr, ggplot2, magrittr, parallel, stats, utils, grDevices
System Requirements
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Build Report
Build Report
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package
nucleR_2.42.0.tar.gz
Windows Binary (x86_64)
nucleR_2.41.1.zip
macOS Binary (x86_64)
nucleR_2.42.0.tgz
macOS Binary (arm64)
nucleR_2.42.0.tgz
Source Repository
git clone https://git.bioconductor.org/packages/nucleR
Source Repository (Developer Access)
git clone git@git.bioconductor.org:packages/nucleR
Bioc Package Browser
https://code.bioconductor.org/browse/nucleR/
Package Short Url
https://bioconductor.org/packages/nucleR/
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