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nipalsMCIA
This is the released version of nipalsMCIA; for the devel version, see nipalsMCIA.
Multiple Co-Inertia Analysis via the NIPALS Method
Bioconductor version: Release (3.22)
Computes Multiple Co-Inertia Analysis (MCIA), a dimensionality reduction (jDR) algorithm, for a multi-block dataset using a modification to the Nonlinear Iterative Partial Least Squares method (NIPALS) proposed in (Hanafi et. al, 2010). Allows multiple options for row- and table-level preprocessing, and speeds up computation of variance explained. Vignettes detail application to bulk- and single cell- multi-omics studies.
Author: Maximilian Mattessich [cre] ORCID iD ORCID: 0000-0002-1233-1240 , Joaquin Reyna [aut] ORCID iD ORCID: 0000-0002-8468-2840 , Edel Aron [aut] ORCID iD ORCID: 0000-0002-8683-4772 , Ferhat Ay [aut] ORCID iD ORCID: 0000-0002-0708-6914 , Steven Kleinstein [aut] ORCID iD ORCID: 0000-0003-4957-1544 , Anna Konstorum [aut] ORCID iD ORCID: 0000-0003-4024-2058
Maintainer: Maximilian Mattessich <maximilian.mattessich at northwestern.edu>
citation("nipalsMCIA")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("nipalsMCIA")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("nipalsMCIA")
Details
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Package Archives
Follow Installation instructions to use this package in your R session.