ndexr

This is the released version of ndexr; for the devel version, see ndexr.

NDEx R client library

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DOI: 10.18129/B9.bioc.ndexr

Bioconductor version: Release (3.22)

This package offers an interface to NDEx servers, e.g. the public server at http://ndexbio.org/. It can retrieve and save networks via the API. Networks are offered as RCX object and as igraph representation.

Author: Florian Auer [cre, aut] ORCID iD ORCID: 0000-0002-5320-8900 , Frank Kramer [ctb], Alex Ishkin [ctb], Dexter Pratt [ctb]

Maintainer: Florian Auer <florian.auer at informatik.uni-augsburg.de>

Citation (from within R, enter citation("ndexr")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("ndexr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ndexr")

NDExR Vignette HTML R Script

Reference Manual PDF

NEWS Text

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DataImport, Network, Pathways, Software

Version 1.32.0

In Bioconductor since BioC 3.6 (R-3.4) (8 years)

License BSD_3_clause + file LICENSE

Depends RCX

Imports httr, jsonlite, plyr, tidyr

System Requirements

URL https://github.com/frankkramer-lab/ndexr

Bug Reports https://github.com/frankkramer-lab/ndexr/issues

Suggests BiocStyle, testthat, knitr, rmarkdown

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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ndexr_1.32.0.tar.gz

Windows Binary (x86_64) ndexr_1.31.0.zip

macOS Binary (x86_64) ndexr_1.32.0.tgz

macOS Binary (arm64) ndexr_1.32.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/ndexr

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ndexr

Bioc Package Browser https://code.bioconductor.org/browse/ndexr/

Package Short Url https://bioconductor.org/packages/ndexr/

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