msgbsR

This is the released version of msgbsR; for the devel version, see msgbsR.

msgbsR: methylation sensitive genotyping by sequencing (MS-GBS) R functions

Bioconductor version: Release (3.22)

Pipeline for the anaysis of a MS-GBS experiment.

Author: Benjamin Mayne

Maintainer: Benjamin Mayne <benjamin.mayne at adelaide.edu.au>

Citation (from within R, enter citation("msgbsR")):

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("msgbsR")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("msgbsR")

msgbsR_Example PDF R Script

Reference Manual PDF

Version 1.34.0

In Bioconductor since BioC 3.5 (R-3.4) (8.5 years)

License GPL-2

Depends R (>= 3.5.0), GenomicRanges, methods

System Requirements

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Follow Installation instructions to use this package in your R session.

Source Package msgbsR_1.34.0.tar.gz

Windows Binary (x86_64) msgbsR_1.33.1.zip

macOS Binary (x86_64) msgbsR_1.34.0.tgz

macOS Binary (arm64) msgbsR_1.34.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/msgbsR

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/msgbsR

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