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metabCombiner
This is the released version of metabCombiner; for the devel version, see metabCombiner.
Method for Combining LC-MS Metabolomics Feature Measurements
Bioconductor version: Release (3.22)
This package aligns LC-HRMS metabolomics datasets acquired from biologically similar specimens analyzed under similar, but not necessarily identical, conditions. Peak-picked and simply aligned metabolomics feature tables (consisting of m/z, rt, and per-sample abundance measurements, plus optional identifiers & adduct annotations) are accepted as input. The package outputs a combined table of feature pair alignments, organized into groups of similar m/z, and ranked by a similarity score. Input tables are assumed to be acquired using similar (but not necessarily identical) analytical methods.
Author: Hani Habra [aut, cre], Alla Karnovsky [ths]
Maintainer: Hani Habra <hhabra1 at gmail.com>
citation("metabCombiner")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("metabCombiner")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("metabCombiner")
Details
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Package Archives
Follow Installation instructions to use this package in your R session.