immunogenViewer

This is the released version of immunogenViewer; for the devel version, see immunogenViewer.

Visualization and evaluation of protein immunogens

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DOI: 10.18129/B9.bioc.immunogenViewer

Bioconductor version: Release (3.22)

Plots protein properties and visualizes position of peptide immunogens within protein sequence. Allows evaluation of immunogens based on structural and functional annotations to infer suitability for antibody-based methods aiming to detect native proteins.

Author: Katharina Waury [aut, cre] ORCID iD ORCID: 0000-0002-8570-7640

Maintainer: Katharina Waury <kathiwaury at gmail.com>

Citation (from within R, enter citation("immunogenViewer")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("immunogenViewer")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("immunogenViewer")

Using immunogenViewer to evaluate and choose antibodies HTML R Script

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews FeatureExtraction, Proteomics, Software, Visualization

Version 1.4.0

In Bioconductor since BioC 3.20 (R-4.4) (1 year)

License Apache License (>= 2)

Depends R (>= 4.0)

Imports ggplot2, httr, jsonlite, patchwork, UniProt.ws

System Requirements

URL https://github.com/kathiwaury/immunogenViewer

Bug Reports https://github.com/kathiwaury/immunogenViewer/issues

Suggests BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0), DT

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package immunogenViewer_1.4.0.tar.gz

Windows Binary (x86_64) immunogenViewer_1.3.1.zip

macOS Binary (x86_64) immunogenViewer_1.4.0.tgz

macOS Binary (arm64) immunogenViewer_1.4.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/immunogenViewer

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/immunogenViewer

Bioc Package Browser https://code.bioconductor.org/browse/immunogenViewer/

Package Short Url https://bioconductor.org/packages/immunogenViewer/

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