epivizrData

This is the released version of epivizrData; for the devel version, see epivizrData.

Data Management API for epiviz interactive visualization app

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DOI: 10.18129/B9.bioc.epivizrData

Bioconductor version: Release (3.22)

Serve data from Bioconductor Objects through a WebSocket connection.

Author: Hector Corrada Bravo [aut, cre], Florin Chelaru [aut]

Maintainer: Hector Corrada Bravo <hcorrada at gmail.com>

Citation (from within R, enter citation("epivizrData")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("epivizrData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("epivizrData")

epivizrData Usage HTML R Script

Reference Manual PDF

NEWS Text

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Infrastructure, Software, Visualization

Version 1.38.0

In Bioconductor since BioC 3.3 (R-3.3) (9.5 years)

License MIT + file LICENSE

Depends R (>= 3.4), methods, epivizrServer(>= 1.1.1), Biobase

Imports S4Vectors, GenomicRanges(>= 1.61.1), SummarizedExperiment(>= 1.39.1), OrganismDbi, GenomicFeatures(>= 1.61.4), Seqinfo, IRanges, ensembldb(>= 2.33.1)

System Requirements

URL http://epiviz.github.io

Bug Reports https://github.com/epiviz/epivizrData/issues

Suggests testthat, roxygen2, bumphunter, hgu133plus2.db, Mus.musculus, TxDb.Mmusculus.UCSC.mm10.knownGene, rjson, knitr, rmarkdown, BiocStyle, EnsDb.Mmusculus.v79, AnnotationHub, rtracklayer, utils, RMySQL, DBI, matrixStats

Linking To

Enhances

Depends On Me

Imports Me epivizr, epivizrChart, scTreeViz

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package epivizrData_1.38.0.tar.gz

Windows Binary (x86_64) epivizrData_1.37.2.zip

macOS Binary (x86_64) epivizrData_1.38.0.tgz

macOS Binary (arm64) epivizrData_1.38.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/epivizrData

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/epivizrData

Bioc Package Browser https://code.bioconductor.org/browse/epivizrData/

Package Short Url https://bioconductor.org/packages/epivizrData/

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