customCMPdb

This is the released version of customCMPdb; for the devel version, see customCMPdb.

Customize and Query Compound Annotation Database

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DOI: 10.18129/B9.bioc.customCMPdb

Bioconductor version: Release (3.22)

This package serves as a query interface for important community collections of small molecules, while also allowing users to include custom compound collections.

Author: Yuzhu Duan [aut, cre], Thomas Girke [aut]

Maintainer: Yuzhu Duan <yduan004 at ucr.edu>

Citation (from within R, enter citation("customCMPdb")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("customCMPdb")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("customCMPdb")

customCMPdb HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews AnnotationHubSoftware, Cheminformatics, Software

Version 1.20.0

In Bioconductor since BioC 3.12 (R-4.0) (5 years)

License Artistic-2.0

Depends R (>= 4.0)

Imports AnnotationHub, RSQLite, XML, utils, ChemmineR, methods, stats, rappdirs, BiocFileCache

System Requirements

URL https://github.com/yduan004/customCMPdb/

Bug Reports https://github.com/yduan004/customCMPdb/issues

Suggests knitr, rmarkdown, testthat, BiocStyle

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package customCMPdb_1.20.0.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64) customCMPdb_1.20.0.tgz

macOS Binary (arm64) customCMPdb_1.20.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/customCMPdb

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/customCMPdb

Bioc Package Browser https://code.bioconductor.org/browse/customCMPdb/

Package Short Url https://bioconductor.org/packages/customCMPdb/

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