blase
This is the released version of blase; for the devel version, see blase.
Bulk Linking Analysis for Single-cell Experiments
Bioconductor version: Release (3.22)
BLASE is a method for finding where bulk RNA-seq data lies on a single-cell pseudotime trajectory. It uses a fast and understandable approach based on Spearman correlation, with bootstrapping to provide confidence. BLASE can be used to "date" bulk RNA-seq data, annotate cell types in scRNA-seq, and help correct for developmental phenotype differences in bulk RNA-seq experiments.
Author: Andrew McCluskey [aut, cre] ORCID iD ORCID: 0009-0004-4187-799X , Toby Kettlewell [aut] ORCID iD ORCID: 0009-0001-1225-3318 , Adrian M. Smith [aut] ORCID iD ORCID: 0000-0001-8833-2330 , Rhiannon Kundu [aut] ORCID iD ORCID: 0000-0003-3970-5860 , David A. Gunn [aut] ORCID iD ORCID: 0000-0001-9866-3221 , Thomas D. Otto [aut, ths] ORCID iD ORCID: 0000-0002-1246-7404
Maintainer: Andrew McCluskey <2117532m at student.gla.ac.uk>
citation("blase")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("blase")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("blase")
Details
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Follow Installation instructions to use this package in your R session.