biobtreeR

This is the released version of biobtreeR; for the devel version, see biobtreeR.

Using biobtree tool from R

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DOI: 10.18129/B9.bioc.biobtreeR

Bioconductor version: Release (3.22)

The biobtreeR package provides an interface to [biobtree](https://github.com/tamerh/biobtree) tool which covers large set of bioinformatics datasets and allows search and chain mappings functionalities.

Author: Tamer Gur

Maintainer: Tamer Gur <tgur at ebi.ac.uk>

Citation (from within R, enter citation("biobtreeR")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("biobtreeR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("biobtreeR")

The biobtreeR users guide HTML R Script

Reference Manual PDF

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Annotation, Software

Version 1.22.0

In Bioconductor since BioC 3.11 (R-4.0) (5.5 years)

License MIT + file LICENSE

Depends

Imports httr, httpuv, stringi, jsonlite, methods, utils

System Requirements

URL https://github.com/tamerh/biobtreeR

Bug Reports https://github.com/tamerh/biobtreeR/issues

Suggests BiocStyle, knitr, testthat, rmarkdown, markdown

Linking To

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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package biobtreeR_1.22.0.tar.gz

Windows Binary (x86_64) biobtreeR_1.21.0.zip

macOS Binary (x86_64) biobtreeR_1.22.0.tgz

macOS Binary (arm64)

Source Repository git clone https://git.bioconductor.org/packages/biobtreeR

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/biobtreeR

Bioc Package Browser https://code.bioconductor.org/browse/biobtreeR/

Package Short Url https://bioconductor.org/packages/biobtreeR/

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