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anndataR
This is the released version of anndataR; for the devel version, see anndataR.
AnnData interoperability in R
Bioconductor version: Release (3.22)
Bring the power and flexibility of AnnData to the R ecosystem, allowing you to effortlessly manipulate and analyse your single-cell data. This package lets you work with backed h5ad and zarr files, directly access various slots (e.g. X, obs, var), or convert the data into SingleCellExperiment and Seurat objects.
Author: Robrecht Cannoodt [aut, cre] (ORCID: ORCID iD ORCID: 0000-0003-3641-729X , github: rcannood), Luke Zappia [aut] (ORCID: ORCID iD ORCID: 0000-0001-7744-8565 , github: lazappi), Martin Morgan [aut] (ORCID: ORCID iD ORCID: 0000-0002-5874-8148 , github: mtmorgan), Louise Deconinck [aut] (ORCID: ORCID iD ORCID: 0000-0001-8100-6823 , github: LouiseDck), Danila Bredikhin [ctb] (ORCID: ORCID iD ORCID: 0000-0001-8089-6983 , github: gtca), Isaac Virshup [ctb] (ORCID: ORCID iD ORCID: 0000-0002-1710-8945 , github: ivirshup), Brian Schilder [ctb] (ORCID: ORCID iD ORCID: 0000-0001-5949-2191 , github: bschilder), Chananchida Sang-aram [ctb] (ORCID: ORCID iD ORCID: 0000-0002-0922-0822 , github: csangara), Data Intuitive [fnd, cph], Chan Zuckerberg Initiative [fnd], scverse consortium [spn]
Maintainer: Robrecht Cannoodt <robrecht at data-intuitive.com>
citation("anndataR")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("anndataR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("anndataR")
Details
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Package Archives
Follow Installation instructions to use this package in your R session.