alabaster.se

This is the released version of alabaster.se; for the devel version, see alabaster.se.

Load and Save SummarizedExperiments from File

Platform availability badge Ranking badge Support activity badge Years in BioConductor badge Build results badge Last commit badge Dependency count badge

DOI: 10.18129/B9.bioc.alabaster.se

Bioconductor version: Release (3.22)

Save SummarizedExperiments into file artifacts, and load them back into memory. This is a more portable alternative to serialization of such objects into RDS files. Each artifact is associated with metadata for further interpretation; downstream applications can enrich this metadata with context-specific properties.

Author: Aaron Lun [aut, cre]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Citation (from within R, enter citation("alabaster.se")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("alabaster.se")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("alabaster.se")

Saving and loading SummarizedExperiments HTML R Script

Reference Manual PDF

NEWS Text

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DataImport, DataRepresentation, Software

Version 1.10.0

In Bioconductor since BioC 3.17 (R-4.3) (2.5 years)

License MIT + file LICENSE

Depends SummarizedExperiment, alabaster.base

Imports methods, alabaster.ranges, alabaster.matrix, BiocGenerics, S4Vectors, IRanges, GenomicRanges, jsonlite

System Requirements

URL

Suggests rmarkdown, knitr, testthat, BiocStyle

Linking To

Enhances

Depends On Me

Imports Me alabaster, alabaster.mae, alabaster.sce, alabaster.vcf, celldex

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package alabaster.se_1.10.0.tar.gz

Windows Binary (x86_64) alabaster.se_1.9.0.zip

macOS Binary (x86_64) alabaster.se_1.10.0.tgz

macOS Binary (arm64) alabaster.se_1.10.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/alabaster.se

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/alabaster.se

Bioc Package Browser https://code.bioconductor.org/browse/alabaster.se/

Package Short Url https://bioconductor.org/packages/alabaster.se/

Package Downloads Report Download Stats