TTMap
This is the released version of TTMap; for the devel version, see TTMap.
Two-Tier Mapper: a clustering tool based on topological data analysis
Bioconductor version: Release (3.22)
TTMap is a clustering method that groups together samples with the same deviation in comparison to a control group. It is specially useful when the data is small. It is parameter free.
Author: Rachel Jeitziner
Maintainer: Rachel Jeitziner <rachel.jeitziner at epfl.ch>
Citation (from within R, enter
citation("TTMap")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TTMap")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TTMap") Reference Manual
PDF
Details
biocViews
Classification, Clustering, DifferentialExpression, Microarray, MultipleComparison, Software
Version
1.32.0
In Bioconductor since
BioC 3.7 (R-3.5) (7.5 years)
License
GPL-2
Depends
rgl, colorRamps
Imports
grDevices, graphics, stats, utils, methods, SummarizedExperiment, Biobase
System Requirements
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Build Report
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Package Archives
Follow Installation instructions to use this package in your R session.
Source Package
TTMap_1.32.0.tar.gz
Windows Binary (x86_64)
TTMap_1.31.0.zip
macOS Binary (x86_64)
TTMap_1.32.0.tgz
macOS Binary (arm64)
TTMap_1.32.0.tgz
Source Repository
git clone https://git.bioconductor.org/packages/TTMap
Source Repository (Developer Access)
git clone git@git.bioconductor.org:packages/TTMap
Bioc Package Browser
https://code.bioconductor.org/browse/TTMap/
Package Short Url
https://bioconductor.org/packages/TTMap/
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