ScaledMatrix

This is the released version of ScaledMatrix; for the devel version, see ScaledMatrix.

Creating a DelayedMatrix of Scaled and Centered Values

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DOI: 10.18129/B9.bioc.ScaledMatrix

Bioconductor version: Release (3.22)

Provides delayed computation of a matrix of scaled and centered values. The result is equivalent to using the scale() function but avoids explicit realization of a dense matrix during block processing. This permits greater efficiency in common operations, most notably matrix multiplication.

Author: Aaron Lun [aut, cre, cph]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Citation (from within R, enter citation("ScaledMatrix")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("ScaledMatrix")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ScaledMatrix")

Using the ScaledMatrix HTML R Script

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DataRepresentation, Software

Version 1.18.0

In Bioconductor since BioC 3.13 (R-4.1) (4.5 years)

License GPL-3

Depends

Imports methods, Matrix, S4Vectors, DelayedArray

System Requirements

URL https://github.com/LTLA/ScaledMatrix

Bug Reports https://github.com/LTLA/ScaledMatrix/issues

Suggests testthat, BiocStyle, knitr, rmarkdown, BiocSingular, DelayedMatrixStats

Linking To

Enhances

Depends On Me

Imports Me batchelor, BiocSingular, mumosa, scPCA

Suggests Me scran

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ScaledMatrix_1.18.0.tar.gz

Windows Binary (x86_64) ScaledMatrix_1.17.0.zip

macOS Binary (x86_64) ScaledMatrix_1.18.0.tgz

macOS Binary (arm64) ScaledMatrix_1.18.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/ScaledMatrix

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ScaledMatrix

Bioc Package Browser https://code.bioconductor.org/browse/ScaledMatrix/

Package Short Url https://bioconductor.org/packages/ScaledMatrix/

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