SC3

This is the released version of SC3; for the devel version, see SC3.

Single-Cell Consensus Clustering

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DOI: 10.18129/B9.bioc.SC3

Bioconductor version: Release (3.22)

A tool for unsupervised clustering and analysis of single cell RNA-Seq data.

Author: Vladimir Kiselev

Maintainer: Vladimir Kiselev <vladimir.yu.kiselev at gmail.com>

Citation (from within R, enter citation("SC3")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("SC3")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SC3")

SC3 package manual HTML R Script

Reference Manual PDF

NEWS Text

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Classification, Clustering, DataRepresentation, DifferentialExpression, DimensionReduction, GUI, ImmunoOncology, RNASeq, SingleCell, Software, SupportVectorMachine, Transcription, Transcriptomics, Visualization

Version 1.38.0

In Bioconductor since BioC 3.3 (R-3.3) (9.5 years)

License GPL-3

Depends R (>= 3.3)

Imports graphics, stats, utils, methods, e1071, parallel, foreach, doParallel, doRNG, shiny, ggplot2, pheatmap (>= 1.0.8), ROCR, robustbase, rrcov, cluster, WriteXLS, Rcpp (>= 0.11.1), SummarizedExperiment, SingleCellExperiment, BiocGenerics, S4Vectors

System Requirements

URL https://github.com/hemberg-lab/SC3

Bug Reports https://support.bioconductor.org/t/sc3/

Suggests knitr, rmarkdown, mclust, scater, BiocStyle

Linking To Rcpp, RcppArmadillo

Enhances

Depends On Me

Imports Me FEAST

Suggests Me InteractiveComplexHeatmap, scTreeViz, VAExprs

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SC3_1.38.0.tar.gz

Windows Binary (x86_64) SC3_1.37.0.zip (64-bit only)

macOS Binary (x86_64) SC3_1.38.0.tgz

macOS Binary (arm64) SC3_1.38.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/SC3

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SC3

Bioc Package Browser https://code.bioconductor.org/browse/SC3/

Package Short Url https://bioconductor.org/packages/SC3/

Package Downloads Report Download Stats