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PSMatch
This is the released version of PSMatch; for the devel version, see PSMatch.
Handling and Managing Peptide Spectrum Matches
Bioconductor version: Release (3.22)
The PSMatch package helps proteomics practitioners to load, handle and manage Peptide Spectrum Matches. It provides functions to model peptide-protein relations as adjacency matrices and connected components, visualise these as graphs and make informed decision about shared peptide filtering. The package also provides functions to calculate and visualise MS2 fragment ions.
Author: Laurent Gatto [aut, cre] ORCID iD ORCID: 0000-0002-1520-2268 , Johannes Rainer [aut] ORCID iD ORCID: 0000-0002-6977-7147 , Sebastian Gibb [aut] ORCID iD ORCID: 0000-0001-7406-4443 , Samuel Wieczorek [ctb], Thomas Burger [ctb], Guillaume Deflandre [ctb] ORCID iD ORCID: 0009-0008-1257-2416
Maintainer: Laurent Gatto <laurent.gatto at uclouvain.be>
citation("PSMatch")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("PSMatch")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("PSMatch")
Details
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Follow Installation instructions to use this package in your R session.