PIPETS
This is the released version of PIPETS; for the devel version, see PIPETS.
Poisson Identification of PEaks from Term-Seq data
Bioconductor version: Release (3.22)
PIPETS provides statistically robust analysis for 3'-seq/term-seq data. It utilizes a sliding window approach to apply a Poisson Distribution test to identify genomic positions with termination read coverage that is significantly higher than the surrounding signal. PIPETS then condenses proximal signal and produces strand specific results that contain all significant termination peaks.
Author: Quinlan Furumo [aut, cre] ORCID iD ORCID: 0000-0003-4486-302X
Maintainer: Quinlan Furumo <furumo at bc.edu>
citation("PIPETS")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("PIPETS")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("PIPETS")
Details
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Package Archives
Follow Installation instructions to use this package in your R session.