NPARC

This is the released version of NPARC; for the devel version, see NPARC.

Non-parametric analysis of response curves for thermal proteome profiling experiments

Platform availability badge Ranking badge Support activity badge Years in BioConductor badge Build results badge Last commit badge Dependency count badge

DOI: 10.18129/B9.bioc.NPARC

Bioconductor version: Release (3.22)

Perform non-parametric analysis of response curves as described by Childs, Bach, Franken et al. (2019): Non-parametric analysis of thermal proteome profiles reveals novel drug-binding proteins.

Author: Dorothee Childs, Nils Kurzawa

Maintainer: Nils Kurzawa <nilskurzawa at gmail.com>

Citation (from within R, enter citation("NPARC")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("NPARC")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("NPARC")

Analysing thermal proteome profiling data with the NPARC package HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Proteomics, Software

Version 1.22.0

In Bioconductor since BioC 3.11 (R-4.0) (5.5 years)

License GPL-3

Depends R (>= 4.0.0)

Imports dplyr, tidyr, BiocParallel, broom, MASS, rlang, magrittr, stats, methods

System Requirements

URL

Suggests testthat, devtools, knitr, rprojroot, rmarkdown, ggplot2, BiocStyle

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package NPARC_1.22.0.tar.gz

Windows Binary (x86_64) NPARC_1.21.0.zip

macOS Binary (x86_64) NPARC_1.22.0.tgz

macOS Binary (arm64) NPARC_1.22.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/NPARC

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/NPARC

Bioc Package Browser https://code.bioconductor.org/browse/NPARC/

Package Short Url https://bioconductor.org/packages/NPARC/

Package Downloads Report Download Stats