InTAD
This is the released version of InTAD; for the devel version, see InTAD.
Search for correlation between epigenetic signals and gene expression in TADs
Bioconductor version: Release (3.22)
The package is focused on the detection of correlation between expressed genes and selected epigenomic signals (i.e. enhancers obtained from ChIP-seq data) either within topologically associated domains (TADs) or between chromatin contact loop anchors. Various parameters can be controlled to investigate the influence of external factors and visualization plots are available for each analysis step.
Author: Konstantin Okonechnikov, Serap Erkek, Lukas Chavez
Maintainer: Konstantin Okonechnikov <k.okonechnikov at gmail.com>
citation("InTAD")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("InTAD")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("InTAD")
Details
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Package Archives
Follow Installation instructions to use this package in your R session.