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HybridExpress
This is the released version of HybridExpress; for the devel version, see HybridExpress.
Comparative analysis of RNA-seq data for hybrids and their progenitors
Bioconductor version: Release (3.22)
HybridExpress can be used to perform comparative transcriptomics analysis of hybrids (or allopolyploids) relative to their progenitor species. The package features functions to perform exploratory analyses of sample grouping, identify differentially expressed genes in hybrids relative to their progenitors, classify genes in expression categories (N = 12) and classes (N = 5), and perform functional analyses. We also provide users with graphical functions for the seamless creation of publication-ready figures that are commonly used in the literature.
Author: Fabricio Almeida-Silva [aut, cre] ORCID iD ORCID: 0000-0002-5314-2964 , Lucas Prost-Boxoen [aut] ORCID iD ORCID: 0000-0003-2779-9097 , Yves Van de Peer [aut] ORCID iD ORCID: 0000-0003-4327-3730
Maintainer: Fabricio Almeida-Silva <fabricio_almeidasilva at hotmail.com>
citation("HybridExpress")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("HybridExpress")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("HybridExpress")
Details
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Follow Installation instructions to use this package in your R session.