GloScope

This is the released version of GloScope; for the devel version, see GloScope.

Population-level Representation on scRNA-Seq data

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DOI: 10.18129/B9.bioc.GloScope

Bioconductor version: Release (3.22)

This package aims at representing and summarizing the entire single-cell profile of a sample. It allows researchers to perform important bioinformatic analyses at the sample-level such as visualization and quality control. The main functions Estimate sample distribution and calculate statistical divergence among samples, and visualize the distance matrix through MDS plots.

Author: William Torous [aut, cre] ORCID iD ORCID: 0000-0001-5668-5510 , Hao Wang [aut] ORCID iD ORCID: 0000-0002-0749-474X , Elizabeth Purdom [aut], Boying Gong [aut]

Maintainer: William Torous <wtorous at berkeley.edu>

Citation (from within R, enter citation("GloScope")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("GloScope")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GloScope")

GloScope HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DataRepresentation, QualityControl, RNASeq, Sequencing, SingleCell, Software

Version 2.0.0

In Bioconductor since BioC 3.18 (R-4.3) (2 years)

License Artistic-2.0

Depends R (>= 4.4.0)

Imports utils, stats, MASS, mclust, ggplot2, RANN, FNN, BiocParallel, mvnfast, SingleCellExperiment, rlang, RColorBrewer, pheatmap, vegan, cluster, boot, permute

System Requirements

URL

Bug Reports https://github.com/epurdom/GloScope/issues

Suggests BiocStyle, testthat (>= 3.0.0), knitr, rmarkdown, zellkonverter

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GloScope_2.0.0.tar.gz

Windows Binary (x86_64) GloScope_1.7.1.zip

macOS Binary (x86_64) GloScope_2.0.0.tgz

macOS Binary (arm64) GloScope_2.0.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/GloScope

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GloScope

Bioc Package Browser https://code.bioconductor.org/browse/GloScope/

Package Short Url https://bioconductor.org/packages/GloScope/

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