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GeneStructureTools
This is the released version of GeneStructureTools; for the devel version, see GeneStructureTools.
Tools for spliced gene structure manipulation and analysis
Bioconductor version: Release (3.22)
GeneStructureTools can be used to create in silico alternative splicing events, and analyse potential effects this has on functional gene products.
Author: Beth Signal
Maintainer: Beth Signal <b.signal at garvan.org.au>
Citation (from within R, enter
citation("GeneStructureTools")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GeneStructureTools")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GeneStructureTools")
Reference Manual
PDF
NEWS
Text
LICENSE
Text
Details
biocViews
AlternativeSplicing, DifferentialSplicing, FunctionalPrediction, ImmunoOncology, RNASeq, Software, Transcriptomics
Version
1.30.0
In Bioconductor since
BioC 3.7 (R-3.5) (7.5 years)
License
BSD_3_clause + file LICENSE
Depends
Imports
Biostrings, GenomicRanges, IRanges, data.table, plyr, stringdist, stringr, S4Vectors, BSgenome.Mmusculus.UCSC.mm10, stats, utils, Gviz, rtracklayer, methods
System Requirements
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Build Report
Build Report
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package
GeneStructureTools_1.30.0.tar.gz
Windows Binary (x86_64)
GeneStructureTools_1.29.0.zip
macOS Binary (x86_64)
GeneStructureTools_1.30.0.tgz
macOS Binary (arm64)
GeneStructureTools_1.30.0.tgz
Source Repository
git clone https://git.bioconductor.org/packages/GeneStructureTools
Source Repository (Developer Access)
git clone git@git.bioconductor.org:packages/GeneStructureTools
Bioc Package Browser
https://code.bioconductor.org/browse/GeneStructureTools/
Package Short Url
https://bioconductor.org/packages/GeneStructureTools/
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