GCPtools

This is the released version of GCPtools; for the devel version, see GCPtools.

Tools for working with gcloud and gsutil

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DOI: 10.18129/B9.bioc.GCPtools

Bioconductor version: Release (3.22)

Lower-level functionality to interface with Google Cloud Platform tools. 'gcloud' and 'gsutil' are both supported. The functionality provided centers around utilities for the AnVIL platform.

Author: Marcel Ramos [aut, cre] ORCID iD ORCID: 0000-0002-3242-0582 , Nitesh Turaga [aut], Martin Morgan [aut] ORCID iD ORCID: 0000-0002-5874-8148

Maintainer: Marcel Ramos <marcel.ramos at sph.cuny.edu>

Citation (from within R, enter citation("GCPtools")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("GCPtools")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GCPtools")

GCPtools Introduction HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DataImport, Infrastructure, Software, ThirdPartyClient

Version 1.0.0

In Bioconductor since BioC 3.22 (R-4.5) (< 6 months)

License Artistic-2.0

Depends R (>= 4.5.0)

Imports AnVILBase, BiocBaseUtils, dplyr, httr, rlang, tibble, tidyr, utils

System Requirements gsutil, gcloud

URL https://github.com/Bioconductor/GCPtools

Bug Reports https://github.com/Bioconductor/GCPtools/issues

Suggests BiocStyle, knitr, rmarkdown

Linking To

Enhances

Depends On Me

Imports Me AnVIL, AnVILGCP

Suggests Me AnVILPublish

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GCPtools_1.0.0.tar.gz

Windows Binary (x86_64) GCPtools_0.99.2.zip

macOS Binary (x86_64) GCPtools_1.0.0.tgz

macOS Binary (arm64) GCPtools_1.0.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/GCPtools

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GCPtools

Bioc Package Browser https://code.bioconductor.org/browse/GCPtools/

Package Short Url https://bioconductor.org/packages/GCPtools/

Package Downloads Report Download Stats