EBImage

This is the released version of EBImage; for the devel version, see EBImage.

Image processing and analysis toolbox for R

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DOI: 10.18129/B9.bioc.EBImage

Bioconductor version: Release (3.22)

EBImage provides general purpose functionality for image processing and analysis. In the context of (high-throughput) microscopy-based cellular assays, EBImage offers tools to segment cells and extract quantitative cellular descriptors. This allows the automation of such tasks using the R programming language and facilitates the use of other tools in the R environment for signal processing, statistical modeling, machine learning and visualization with image data.

Author: Andrzej Oleś, Gregoire Pau, Mike Smith, Oleg Sklyar, Wolfgang Huber, with contributions from Joseph Barry and Philip A. Marais

Maintainer: Andrzej Oleś <andrzej.oles at gmail.com>

Citation (from within R, enter citation("EBImage")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("EBImage")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("EBImage")

Introduction to EBImage HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Software, Visualization

Version 4.52.0

In Bioconductor since BioC 1.8 (R-2.3) (19.5 years)

License LGPL

Depends methods

Imports BiocGenerics(>= 0.7.1), graphics, grDevices, stats, abind, tiff, jpeg, png, locfit, fftwtools (>= 0.9-7), utils, htmltools, htmlwidgets, RCurl

System Requirements

URL https://github.com/aoles/EBImage

Bug Reports https://github.com/aoles/EBImage/issues

Suggests BiocStyle, digest, knitr, rmarkdown, shiny

Linking To

Enhances

Depends On Me CRImage, cytomapper, flowcatchR, DonaPLLP2013, furrowSeg, MerfishData, nucim

Imports Me alabaster.sfe, bnbc, Cardinal, CatsCradle, cytoviewer, flowCHIC, heatmaps, imcRtools, MoleculeExperiment, RBioFormats, simpleSeg, sosta, SpatialFeatureExperiment, SpatialOmicsOverlay, synapsis, xenLite, yamss, BioImageDbs, OSTA, AiES, bioimagetools, GoogleImage2Array, LFApp, LOMAR, ProxReg, RockFab, SAFARI, spatialGE

Suggests Me HilbertVis, Voyager, spicyWorkflow, aroma.core, cooltools, glow, ijtiff, juicr, lidR, metagear, pliman, rcaiman

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package EBImage_4.52.0.tar.gz

Windows Binary (x86_64) EBImage_4.51.0.zip

macOS Binary (x86_64) EBImage_4.52.0.tgz

macOS Binary (arm64) EBImage_4.52.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/EBImage

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/EBImage

Bioc Package Browser https://code.bioconductor.org/browse/EBImage/

Package Short Url https://bioconductor.org/packages/EBImage/

Package Downloads Report Download Stats