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CytoPipelineGUI

This is the released version of CytoPipelineGUI; for the devel version, see CytoPipelineGUI.

GUI's for visualization of flow cytometry data analysis pipelines


Bioconductor version: Release (3.22)

This package is the companion of the `CytoPipeline` package. It provides GUI's (shiny apps) for the visualization of flow cytometry data analysis pipelines that are run with `CytoPipeline`. Two shiny applications are provided, i.e. an interactive flow frame assessment and comparison tool and an interactive scale transformations visualization and adjustment tool.

Author: Philippe Hauchamps [aut, cre] ORCID iD ORCID: 0000-0003-2865-1852 , Laurent Gatto [aut] ORCID iD ORCID: 0000-0002-1520-2268 , Dan Lin [ctb]

Maintainer: Philippe Hauchamps <philippe.hauchamps at uclouvain.be>

Citation (from within R, enter citation("CytoPipelineGUI")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("CytoPipelineGUI")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CytoPipelineGUI")
CytoPipelineGUI : visualization of Flow Cytometry Data Analysis Pipelines run with CytoPipeline HTML R Script
Demonstration of the CytoPipeline R package suite functionalities HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

Version 1.8.0
In Bioconductor since BioC 3.18 (R-4.3) (2 years)
License GPL-3
Depends R (>= 4.4), CytoPipeline(>= 1.9.3)
System Requirements
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Package Archives

Follow Installation instructions to use this package in your R session.

Windows Binary (x86_64) CytoPipelineGUI_1.7.0.zip
macOS Binary (x86_64) CytoPipelineGUI_1.8.0.tgz
macOS Binary (arm64) CytoPipelineGUI_1.8.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/CytoPipelineGUI
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CytoPipelineGUI
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