CTDquerier

This package is for version 3.22 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see CTDquerier.

Package for CTDbase data query, visualization and downstream analysis

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DOI: 10.18129/B9.bioc.CTDquerier

Bioconductor version: Release (3.22)

Package to retrieve and visualize data from the Comparative Toxicogenomics Database (http://ctdbase.org/). The downloaded data is formated as DataFrames for further downstream analyses.

Author: Carles Hernandez-Ferrer [aut], Juan R. Gonzalez [aut], Xavier Escribà-Montagut [cre]

Maintainer: Xavier Escribà-Montagut <xavier.escriba at isglobal.org>

Citation (from within R, enter citation("CTDquerier")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("CTDquerier")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews BiomedicalInformatics, DataImport, DataRepresentation, GO, GeneSetEnrichment, Infrastructure, KEGG, Network, NetworkEnrichment, Pathways, Software

Version 2.18.0

In Bioconductor since BioC 3.7 (R-3.5) (7.5 years)

License MIT + file LICENSE

Depends R (>= 4.1)

Imports RCurl, stringr, S4Vectors, stringdist, ggplot2, igraph, utils, grid, gridExtra, methods, stats, BiocFileCache

System Requirements

URL

Suggests BiocStyle, knitr, rmarkdown

Linking To

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Depends On Me

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CTDquerier_2.18.0.tar.gz

Windows Binary (x86_64) CTDquerier_2.17.0.zip

macOS Binary (x86_64) CTDquerier_2.18.0.tgz

macOS Binary (arm64) CTDquerier_2.18.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/CTDquerier

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CTDquerier

Bioc Package Browser https://code.bioconductor.org/browse/CTDquerier/

Package Short Url https://bioconductor.org/packages/CTDquerier/

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