CCPlotR

This is the released version of CCPlotR; for the devel version, see CCPlotR.

Plots For Visualising Cell-Cell Interactions

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DOI: 10.18129/B9.bioc.CCPlotR

Bioconductor version: Release (3.22)

CCPlotR is an R package for visualising results from tools that predict cell-cell interactions from single-cell RNA-seq data. These plots are generic and can be used to visualise results from multiple tools such as Liana, CellPhoneDB, NATMI etc.

Author: Sarah Ennis [aut, cre] ORCID iD ORCID: 0000-0001-6100-8573 , Pilib Ó Broin [aut], Eva Szegezdi [aut]

Maintainer: Sarah Ennis <ennissarah94 at gmail.com>

Citation (from within R, enter citation("CCPlotR")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("CCPlotR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CCPlotR")

User Guide HTML R Script

Reference Manual PDF

NEWS Text

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews CellBiology, Network, SingleCell, Software, SystemsBiology, Visualization

Version 1.8.0

In Bioconductor since BioC 3.18 (R-4.3) (2 years)

License MIT + file LICENSE

Depends

Imports plyr, tidyr, dplyr, ggplot2, forcats, ggraph, igraph, scatterpie, circlize, ComplexHeatmap, tibble, grid, ggbump, stringr, ggtext, ggh4x, patchwork, RColorBrewer, scales, viridis, grDevices, graphics, stats, methods

System Requirements

URL https://github.com/Sarah145/CCPlotR

Bug Reports https://github.com/Sarah145/CCPlotR/issues

Suggests knitr, rmarkdown, BiocStyle, testthat (>= 3.0.0)

Linking To

Enhances

Depends On Me

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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CCPlotR_1.8.0.tar.gz

Windows Binary (x86_64) CCPlotR_1.7.0.zip

macOS Binary (x86_64) CCPlotR_1.8.0.tgz

macOS Binary (arm64) CCPlotR_1.8.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/CCPlotR

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CCPlotR

Bioc Package Browser https://code.bioconductor.org/browse/CCPlotR/

Package Short Url https://bioconductor.org/packages/CCPlotR/

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