BiocHubsShiny

This is the released version of BiocHubsShiny; for the devel version, see BiocHubsShiny.

View AnnotationHub and ExperimentHub Resources Interactively

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DOI: 10.18129/B9.bioc.BiocHubsShiny

Bioconductor version: Release (3.22)

A package that allows interactive exploration of AnnotationHub and ExperimentHub resources. It uses DT / DataTable to display resources for multiple organisms. It provides template code for reproducibility and for downloading resources via the indicated Hub package.

Author: Marcel Ramos [aut, cre] ORCID iD ORCID: 0000-0002-3242-0582 , Vincent Carey [ctb]

Maintainer: Marcel Ramos <marcel.ramos at sph.cuny.edu>

Citation (from within R, enter citation("BiocHubsShiny")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("BiocHubsShiny")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BiocHubsShiny")

BiocHubsShiny Overview HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews ShinyApps, Software

Version 1.10.0

In Bioconductor since BioC 3.17 (R-4.3) (2.5 years)

License Artistic-2.0

Depends R (>= 4.3.0), shiny

Imports AnnotationHub, ExperimentHub, DT, htmlwidgets, rclipboard, S4Vectors, shinyAce, shinybiocloader, shinyjs, shinythemes, utils

System Requirements

URL https://github.com/Bioconductor/BiocHubsShiny

Bug Reports https://github.com/Bioconductor/BiocHubsShiny/issues

Suggests BiocManager, BiocStyle, curl, glue, knitr, rmarkdown, sessioninfo, shinytest2

Linking To

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BiocHubsShiny_1.10.0.tar.gz

Windows Binary (x86_64) BiocHubsShiny_1.9.1.zip

macOS Binary (x86_64) BiocHubsShiny_1.10.0.tgz

macOS Binary (arm64) BiocHubsShiny_1.10.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/BiocHubsShiny

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BiocHubsShiny

Bioc Package Browser https://code.bioconductor.org/browse/BiocHubsShiny/

Package Short Url https://bioconductor.org/packages/BiocHubsShiny/

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