BiocHail

This is the released version of BiocHail; for the devel version, see BiocHail.

basilisk and hail

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DOI: 10.18129/B9.bioc.BiocHail

Bioconductor version: Release (3.22)

Use hail via basilisk when appropriate, or via reticulate. This package can be used in terra.bio to interact with UK Biobank resources processed by hail.is.

Author: Vincent Carey [aut, cre] ORCID iD ORCID: 0000-0003-4046-0063

Maintainer: Vincent Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("BiocHail")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("BiocHail")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BiocHail")

01 BiocHail -- GWAS tutorial HTML R Script

02 Working with larger VCF: T2T by chromosome HTML R Script

03 Working with UK Biobank summary statistics HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Infrastructure, Software

Version 1.10.0

In Bioconductor since BioC 3.17 (R-4.3) (2.5 years)

License Artistic-2.0

Depends R (>= 4.3.0), graphics, stats, utils

Imports reticulate, basilisk, BiocFileCache, methods, dplyr, BiocGenerics

System Requirements

URL https://github.com/vjcitn/BiocHail

Bug Reports https://github.com/vjcitn/BiocHail/issues

Suggests knitr, testthat, BiocStyle, ggplot2, DT

Linking To

Enhances

Depends On Me

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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BiocHail_1.10.0.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64)

macOS Binary (arm64)

Source Repository git clone https://git.bioconductor.org/packages/BiocHail

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BiocHail

Bioc Package Browser https://code.bioconductor.org/browse/BiocHail/

Package Short Url https://bioconductor.org/packages/BiocHail/

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