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BANDITS
This is the released version of BANDITS; for the devel version, see BANDITS.
BANDITS: Bayesian ANalysis of DIfferenTial Splicing
Bioconductor version: Release (3.22)
BANDITS is a Bayesian hierarchical model for detecting differential splicing of genes and transcripts, via differential transcript usage (DTU), between two or more conditions. The method uses a Bayesian hierarchical framework, which allows for sample specific proportions in a Dirichlet-Multinomial model, and samples the allocation of fragments to the transcripts. Parameters are inferred via Markov chain Monte Carlo (MCMC) techniques and a DTU test is performed via a multivariate Wald test on the posterior densities for the average relative abundance of transcripts.
Author: Simone Tiberi [aut, cre].
Maintainer: Simone Tiberi <simone.tiberi at unibo.it>
citation("BANDITS")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("BANDITS")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("BANDITS")
Details
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Follow Installation instructions to use this package in your R session.