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Single.mTEC.Transcriptomes
This is the development version of Single.mTEC.Transcriptomes; for the stable release version, see Single.mTEC.Transcriptomes.
Single Cell Transcriptome Data and Analysis of Mouse mTEC cells
Bioconductor version: Development (3.23)
This data package contains the code used to analyse the single-cell RNA-seq and the bulk ATAC-seq data from the manuscript titled: Single-cell transcriptome analysis reveals coordinated ectopic-gene expression patterns in medullary thymic epithelial cells. This paper was published in Nature Immunology 16,933-941(2015). The data objects provided in this package has been pre-processed: the raw data files can be downloaded from ArrayExpress under the accession identifiers E-MTAB-3346 and E-MTAB-3624. The vignette of this data package provides a documented and reproducible workflow that includes the code that was used to generate each statistic and figure from the manuscript.
Author: Alejandro Reyes
Maintainer: Alejandro Reyes <alejandro.reyes.ds at gmail.com>
citation("Single.mTEC.Transcriptomes")):
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("Single.mTEC.Transcriptomes")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Single.mTEC.Transcriptomes")
Details
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Follow Installation instructions to use this package in your R session.