treeio

This is the development version of treeio; for the stable release version, see treeio.

Base Classes and Functions for Phylogenetic Tree Input and Output

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DOI: 10.18129/B9.bioc.treeio

Bioconductor version: Development (3.23)

'treeio' is an R package to make it easier to import and store phylogenetic tree with associated data; and to link external data from different sources to phylogeny. It also supports exporting phylogenetic tree with heterogeneous associated data to a single tree file and can be served as a platform for merging tree with associated data and converting file formats.

Author: Guangchuang Yu [aut, cre] ORCID iD ORCID: 0000-0002-6485-8781 , Tommy Tsan-Yuk Lam [ctb, ths], Shuangbin Xu [ctb] ORCID iD ORCID: 0000-0003-3513-5362 , Bradley Jones [ctb], Casey Dunn [ctb], Tyler Bradley [ctb], Konstantinos Geles [ctb]

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

Citation (from within R, enter citation("treeio")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("treeio")

For older versions of R, please refer to the appropriate Bioconductor release.