tidyCoverage

This is the development version of tidyCoverage; for the stable release version, see tidyCoverage.

Extract and aggregate genomic coverage over features of interest

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DOI: 10.18129/B9.bioc.tidyCoverage

Bioconductor version: Development (3.23)

`tidyCoverage` framework enables tidy manipulation of collections of genomic tracks and features using `tidySummarizedExperiment` methods. It facilitates the extraction, aggregation and visualization of genomic coverage over individual or thousands of genomic loci, relying on `CoverageExperiment` and `AggregatedCoverage` classes. This accelerates the integration of genomic track data in genomic analysis workflows.

Author: Jacques Serizay [aut, cre]

Maintainer: Jacques Serizay <jacquesserizay at gmail.com>

Citation (from within R, enter citation("tidyCoverage")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("tidyCoverage")

For older versions of R, please refer to the appropriate Bioconductor release.