screenCounter

This is the development version of screenCounter; for the stable release version, see screenCounter.

Counting Reads in High-Throughput Sequencing Screens

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DOI: 10.18129/B9.bioc.screenCounter

Bioconductor version: Development (3.23)

Provides functions for counting reads from high-throughput sequencing screen data (e.g., CRISPR, shRNA) to quantify barcode abundance. Currently supports single barcodes in single- or paired-end data, and combinatorial barcodes in paired-end data.

Author: Aaron Lun [aut, cre] ORCID iD ORCID: 0000-0002-3564-4813

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Citation (from within R, enter citation("screenCounter")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("screenCounter")

For older versions of R, please refer to the appropriate Bioconductor release.