scDotPlot

This is the development version of scDotPlot; for the stable release version, see scDotPlot.

Cluster a Single-cell RNA-seq Dot Plot

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DOI: 10.18129/B9.bioc.scDotPlot

Bioconductor version: Development (3.23)

Dot plots of single-cell RNA-seq data allow for an examination of the relationships between cell groupings (e.g. clusters) and marker gene expression. The scDotPlot package offers a unified approach to perform a hierarchical clustering analysis and add annotations to the columns and/or rows of a scRNA-seq dot plot. It works with SingleCellExperiment and Seurat objects as well as data frames.

Author: Benjamin I Laufer [aut, cre], Brad A Friedman [aut]

Maintainer: Benjamin I Laufer <blaufer at gmail.com>

Citation (from within R, enter citation("scDotPlot")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("scDotPlot")

For older versions of R, please refer to the appropriate Bioconductor release.