pathRender

This is the development version of pathRender; for the stable release version, see pathRender.

Render molecular pathways

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DOI: 10.18129/B9.bioc.pathRender

Bioconductor version: Development (3.23)

build graphs from pathway databases, render them by Rgraphviz.

Author: Li Long <lilong at isb-sib.ch>

Maintainer: Vince Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("pathRender")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("pathRender")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("pathRender")

pathRender overview PDF R Script

pathway graphs colored by expression map PDF R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews GraphAndNetwork, Pathways, Software, Visualization

Version 1.79.0

In Bioconductor since BioC 1.8 (R-2.3) (19.5 years)

License LGPL

Depends graph, Rgraphviz, RColorBrewer, cMAP, AnnotationDbi, methods, stats4

Imports

System Requirements

URL http://www.bioconductor.org

Suggests ALL, hgu95av2.db

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Depends On Me

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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package pathRender_1.79.0.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64)

macOS Binary (arm64) pathRender_1.79.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/pathRender

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/pathRender

Bioc Package Browser https://code.bioconductor.org/browse/pathRender/

Package Short Url https://bioconductor.org/packages/pathRender/

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