mirIntegrator

This is the development version of mirIntegrator; for the stable release version, see mirIntegrator.

Integrating microRNA expression into signaling pathways for pathway analysis

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DOI: 10.18129/B9.bioc.mirIntegrator

Bioconductor version: Development (3.23)

Tools for augmenting signaling pathways to perform pathway analysis of microRNA and mRNA expression levels.

Author: Diana Diaz <dmd at wayne dot edu>

Maintainer: Diana Diaz <dmd at wayne.edu>

Citation (from within R, enter citation("mirIntegrator")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("mirIntegrator")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("mirIntegrator")

mirIntegrator Overview PDF R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews GraphAndNetwork, KEGG, Microarray, Network, Pathways, Software

Version 1.41.0

In Bioconductor since BioC 3.2 (R-3.2) (10 years)

License GPL (>=3)

Depends R (>= 3.3)

Imports graph, ROntoTools, ggplot2, org.Hs.eg.db, AnnotationDbi, Rgraphviz

System Requirements

URL http://datad.github.io/mirIntegrator/

Suggests RUnit, BiocGenerics

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package mirIntegrator_1.41.0.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64) mirIntegrator_1.41.0.tgz

macOS Binary (arm64) mirIntegrator_1.41.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/mirIntegrator

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/mirIntegrator

Bioc Package Browser https://code.bioconductor.org/browse/mirIntegrator/

Package Short Url https://bioconductor.org/packages/mirIntegrator/

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