metabomxtr

This is the development version of metabomxtr; for the stable release version, see metabomxtr.

A package to run mixture models for truncated metabolomics data with normal or lognormal distributions

Platform availability badge Ranking badge Support activity badge Years in BioConductor badge Build results badge Last commit badge Dependency count badge

DOI: 10.18129/B9.bioc.metabomxtr

Bioconductor version: Development (3.23)

The functions in this package return optimized parameter estimates and log likelihoods for mixture models of truncated data with normal or lognormal distributions.

Author: Michael Nodzenski, Anna Reisetter, Denise Scholtens

Maintainer: Michael Nodzenski <michael.nodzenski at gmail.com>

Citation (from within R, enter citation("metabomxtr")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("metabomxtr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("metabomxtr")

metabomxtr PDF R Script

mixnorm PDF R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews ImmunoOncology, MassSpectrometry, Metabolomics, Software

Version 1.45.0

In Bioconductor since BioC 3.0 (R-3.1) (11 years)

License GPL-2

Depends methods, Biobase

Imports optimx, Formula, plyr, multtest, BiocParallel, ggplot2

System Requirements

URL

Suggests xtable, reshape2

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package metabomxtr_1.45.0.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64)

macOS Binary (arm64) metabomxtr_1.45.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/metabomxtr

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/metabomxtr

Bioc Package Browser https://code.bioconductor.org/browse/metabomxtr/

Package Short Url https://bioconductor.org/packages/metabomxtr/

Package Downloads Report Download Stats