adSplit

This is the development version of adSplit; for the stable release version, see adSplit.

Annotation-Driven Clustering

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DOI: 10.18129/B9.bioc.adSplit

Bioconductor version: Development (3.23)

This package implements clustering of microarray gene expression profiles according to functional annotations. For each term genes are annotated to, splits into two subclasses are computed and a significance of the supporting gene set is determined.

Author: Claudio Lottaz, Joern Toedling

Maintainer: Claudio Lottaz <Claudio.Lottaz at klinik.uni-regensburg.de>

Citation (from within R, enter citation("adSplit")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("adSplit")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("adSplit")

Annotation-Driven Clustering PDF R Script

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Clustering, Microarray, Software

Version 1.81.0

In Bioconductor since BioC 1.8 (R-2.3) (19.5 years)

License GPL (>= 2)

Depends R (>= 2.1.0), methods (>= 2.1.0)

Imports AnnotationDbi, Biobase(>= 1.5.12), cluster (>= 1.9.1), GO.db(>= 1.8.1), graphics, grDevices, KEGGREST(>= 1.30.1), multtest(>= 1.6.0), stats (>= 2.1.0)

System Requirements

URL http://compdiag.molgen.mpg.de/software/adSplit.shtml

Suggests golubEsets(>= 1.0), vsn(>= 1.5.0), hu6800.db(>= 1.8.1)

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package adSplit_1.81.0.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64)

macOS Binary (arm64) adSplit_1.81.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/adSplit

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/adSplit

Bioc Package Browser https://code.bioconductor.org/browse/adSplit/

Package Short Url https://bioconductor.org/packages/adSplit/

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