aCGH

This is the development version of aCGH; for the stable release version, see aCGH.

Classes and functions for Array Comparative Genomic Hybridization data

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DOI: 10.18129/B9.bioc.aCGH

Bioconductor version: Development (3.23)

Functions for reading aCGH data from image analysis output files and clone information files, creation of aCGH S3 objects for storing these data. Basic methods for accessing/replacing, subsetting, printing and plotting aCGH objects.

Author: Jane Fridlyand <jfridlyand at cc.ucsf.edu>, Peter Dimitrov <dimitrov at stat.Berkeley.EDU>

Maintainer: Peter Dimitrov <dimitrov at stat.Berkeley.EDU>

Citation (from within R, enter citation("aCGH")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("aCGH")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("aCGH")

aCGH Overview PDF R Script

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews CopyNumberVariation, DataImport, Genetics, Software

Version 1.89.0

In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 20.5 years)

License GPL-2

Depends R (>= 2.10), cluster, survival, multtest

Imports Biobase, grDevices, graphics, methods, stats, splines, utils

System Requirements

URL

Suggests

Linking To

Enhances

Depends On Me CRImage

Imports Me ADaCGH2

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package aCGH_1.89.0.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64)

macOS Binary (arm64) aCGH_1.89.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/aCGH

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/aCGH

Bioc Package Browser https://code.bioconductor.org/browse/aCGH/

Package Short Url https://bioconductor.org/packages/aCGH/

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