SeqArray

This is the development version of SeqArray; for the stable release version, see SeqArray.

Data management of large-scale whole-genome sequence variant calls using GDS files

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DOI: 10.18129/B9.bioc.SeqArray

Bioconductor version: Development (3.23)

Data management of large-scale whole-genome sequencing variant calls with thousands of individuals: genotypic data (e.g., SNVs, indels and structural variation calls) and annotations in SeqArray GDS files are stored in an array-oriented and compressed manner, with efficient data access using the R programming language.

Author: Xiuwen Zheng [aut, cre] ORCID iD ORCID: 0000-0002-1390-0708 , Stephanie Gogarten [aut], David Levine [ctb], Cathy Laurie [ctb]

Maintainer: Xiuwen Zheng <zhengx at u.washington.edu>

Citation (from within R, enter citation("SeqArray")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("SeqArray")

For older versions of R, please refer to the appropriate Bioconductor release.