SCnorm

This is the development version of SCnorm; for the stable release version, see SCnorm.

Normalization of single cell RNA-seq data

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DOI: 10.18129/B9.bioc.SCnorm

Bioconductor version: Development (3.23)

This package implements SCnorm — a method to normalize single-cell RNA-seq data.

Author: Rhonda Bacher

Maintainer: Rhonda Bacher <rbacher at ufl.edu>

Citation (from within R, enter citation("SCnorm")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("SCnorm")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SCnorm")

SCnorm Vignette PDF R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews ImmunoOncology, Normalization, RNASeq, SingleCell, Software

Version 1.33.0

In Bioconductor since BioC 3.6 (R-3.4) (8 years)

License GPL (>= 2)

Depends R (>= 3.4.0)

Imports SingleCellExperiment, SummarizedExperiment, stats, methods, graphics, grDevices, parallel, quantreg, cluster, moments, data.table, BiocParallel, S4Vectors, ggplot2, forcats, BiocGenerics

System Requirements

URL https://github.com/rhondabacher/SCnorm

Bug Reports https://github.com/rhondabacher/SCnorm/issues

Suggests BiocStyle, knitr, rmarkdown, devtools

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SCnorm_1.33.0.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64)

macOS Binary (arm64) SCnorm_1.33.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/SCnorm

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SCnorm

Bioc Package Browser https://code.bioconductor.org/browse/SCnorm/

Package Short Url https://bioconductor.org/packages/SCnorm/

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