RCyjs

This is the development version of RCyjs; for the stable release version, see RCyjs.

Display and manipulate graphs in cytoscape.js

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DOI: 10.18129/B9.bioc.RCyjs

Bioconductor version: Development (3.23)

Interactive viewing and exploration of graphs, connecting R to Cytoscape.js, using websockets.

Author: Paul Shannon

Maintainer: Paul Shannon <paul.thurmond.shannon at gmail.com>

Citation (from within R, enter citation("RCyjs")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("RCyjs")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RCyjs")

RCyjs: programmatic access to the web browser-based network viewer, cytoscape.js HTML R Script

Reference Manual PDF

README Text

NEWS Text

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews GraphAndNetwork, Software, ThirdPartyClient, Visualization

Version 2.33.0

In Bioconductor since BioC 3.1 (R-3.2) (10.5 years)

License MIT + file LICENSE

Depends R (>= 3.5.0), BrowserViz(>= 2.7.18), graph(>= 1.56.0)

Imports methods, httpuv (>= 1.5.0), BiocGenerics, base64enc, utils

System Requirements

URL

Suggests RUnit, BiocStyle, knitr, rmarkdown

Linking To

Enhances

Depends On Me

Imports Me

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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RCyjs_2.33.0.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64) RCyjs_2.33.0.tgz

macOS Binary (arm64) RCyjs_2.33.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/RCyjs

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RCyjs

Bioc Package Browser https://code.bioconductor.org/browse/RCyjs/

Package Short Url https://bioconductor.org/packages/RCyjs/

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