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NanoStringNCTools (development version)

NanoStringNCTools

This is the development version of NanoStringNCTools; for the stable release version, see NanoStringNCTools.

NanoString nCounter Tools

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DOI: 10.18129/B9.bioc.NanoStringNCTools

Bioconductor version: Development (3.23)

Tools for NanoString Technologies nCounter Technology. Provides support for reading RCC files into an ExpressionSet derived object. Also includes methods for QC and normalizaztion of NanoString data.

Author: Patrick Aboyoun [aut], Nicole Ortogero [aut], Maddy Griswold [cre], Zhi Yang [ctb]

Maintainer: Maddy Griswold <mgriswold at nanostring.com>

Citation (from within R, enter citation("NanoStringNCTools")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("NanoStringNCTools")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("NanoStringNCTools")

Introduction to the NanoStringRCCSet Class HTML R Script

Reference Manual PDF

NEWS Text

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews CellBasedAssays, DataImport, GeneExpression, ProprietaryPlatforms, Proteomics, RNASeq, Software, Transcription, Transcriptomics, mRNAMicroarray

Version 1.19.0

In Bioconductor since BioC 3.13 (R-4.1) (4.5 years)

License MIT

Depends R (>= 3.6), Biobase, S4Vectors, ggplot2

Imports BiocGenerics, Biostrings, ggbeeswarm, ggiraph, ggthemes, grDevices, IRanges, methods, pheatmap, RColorBrewer, stats, utils

System Requirements

URL

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Suggests biovizBase, ggbio, RUnit, rmarkdown, knitr, qpdf

Linking To

Enhances

Depends On Me GeomxTools, GeoMxWorkflows

Imports Me GeoDiff

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package NanoStringNCTools_1.19.0.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64)

macOS Binary (arm64) NanoStringNCTools_1.19.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/NanoStringNCTools

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/NanoStringNCTools

Bioc Package Browser https://code.bioconductor.org/browse/NanoStringNCTools/

Package Short Url https://bioconductor.org/packages/NanoStringNCTools/

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