MsBackendSql

This is the development version of MsBackendSql; for the stable release version, see MsBackendSql.

SQL-based Mass Spectrometry Data Backend

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DOI: 10.18129/B9.bioc.MsBackendSql

Bioconductor version: Development (3.23)

SQL-based mass spectrometry (MS) data backend supporting also storange and handling of very large data sets. Objects from this package are supposed to be used with the Spectra Bioconductor package. Through the MsBackendSql with its minimal memory footprint, this package thus provides an alternative MS data representation for very large or remote MS data sets.

Author: Johannes Rainer [aut, cre] ORCID iD ORCID: 0000-0002-6977-7147 , Chong Tang [ctb], Laurent Gatto [ctb] ORCID iD ORCID: 0000-0002-1520-2268

Maintainer: Johannes Rainer <Johannes.Rainer at eurac.edu>

Citation (from within R, enter citation("MsBackendSql")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("MsBackendSql")

For older versions of R, please refer to the appropriate Bioconductor release.