ConsensusClusterPlus

This is the development version of ConsensusClusterPlus; for the stable release version, see ConsensusClusterPlus.

ConsensusClusterPlus

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DOI: 10.18129/B9.bioc.ConsensusClusterPlus

Bioconductor version: Development (3.23)

algorithm for determining cluster count and membership by stability evidence in unsupervised analysis

Author: Matt Wilkerson <mdwilkerson at outlook.com>, Peter Waltman <waltman at soe.ucsc.edu>

Maintainer: Matt Wilkerson <mdwilkerson at outlook.com>

Citation (from within R, enter citation("ConsensusClusterPlus")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("ConsensusClusterPlus")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ConsensusClusterPlus")

ConsensusClusterPlus Tutorial PDF R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Clustering, Software

Version 1.75.0

In Bioconductor since BioC 2.6 (R-2.11) (15.5 years)

License GPL version 2

Depends

Imports Biobase, ALL, graphics, stats, utils, cluster

System Requirements

URL

Suggests

Linking To

Enhances

Depends On Me

Imports Me CATALYST, ChromSCape, DEGreport, FlowSOM, PDATK, DeSousa2013, iSubGen, longmixr, neatmaps, scRNAtools

Suggests Me TCGAbiolinks

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ConsensusClusterPlus_1.75.0.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64)

macOS Binary (arm64) ConsensusClusterPlus_1.75.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/ConsensusClusterPlus

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ConsensusClusterPlus

Bioc Package Browser https://code.bioconductor.org/browse/ConsensusClusterPlus/

Package Short Url https://bioconductor.org/packages/ConsensusClusterPlus/

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