CiteFuse

This is the development version of CiteFuse; for the stable release version, see CiteFuse.

CiteFuse: multi-modal analysis of CITE-seq data

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DOI: 10.18129/B9.bioc.CiteFuse

Bioconductor version: Development (3.23)

CiteFuse pacakage implements a suite of methods and tools for CITE-seq data from pre-processing to integrative analytics, including doublet detection, network-based modality integration, cell type clustering, differential RNA and protein expression analysis, ADT evaluation, ligand-receptor interaction analysis, and interactive web-based visualisation of the analyses.

Author: Yingxin Lin [aut, cre], Hani Kim [aut]

Maintainer: Yingxin Lin <yingxin.lin at sydney.edu.au>

Citation (from within R, enter citation("CiteFuse")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("CiteFuse")

For older versions of R, please refer to the appropriate Bioconductor release.